geoscience.net logo
+ Resolve Article
+ Follow Us
Follow on FacebookFollow on Facebook
Follow on TwitterFollow on Twitter

+ Translate
+ Subscribe to Site Feed
GeoScience Most Shared ContentMost Shared Content

Toward automatic phenotyping of developing embryos from videos


, : Toward automatic phenotyping of developing embryos from videos. IEEE Transactions on Image Processing 14(9): 1360-1371

We describe a trainable system for analyzing videos of developing C. elegans embryos. The system automatically detects, segments, and locates cells and nuclei in microscopic images. The system was designed as the central component of a fully automated phenotyping system. The system contains three modules 1) a convolutional network trained to classify each pixel into five categories: cell wall, cytoplasm, nucleus membrane, nucleus, outside medium; 2) an energy-based model, which cleans up the output of the convolutional network by learning local consistency constraints that must be satisfied by label images; 3) a set of elastic models of the embryo at various stages of development that are matched to the label images.

US$29.90

PMID: 16190471


Other references

Fraser, R.; Goode, F., 1991: Factors determining the location of forest products firms. General technical report NE US Department of Agriculture Forest Service Northeastern Forest Experiment Station: (148) 556-568

Shepherd, D.; Burgess, D.; Jickells, T.; Andrews, J.; Cave, R.; Turner, R.K.; Aldridge, J.; Parker, E.R.; Young, E., 2007: Modelling the effects and economics of managed realignment on the cycling and storage of nutrients, carbon and sediments in the Blackwater estuary UK. A hydrodynamic model is developed for the Blackwater estuary (UK) and used to estimate nitrate removal by denitrification. Using the model, sediment analysis and estimates of sedimentation rates, we estimate changes in estuarine denitrification a...

Reyers, I.; de Gaetano, G.; Donati, M.B., 1986: Prolongation by warfarin of "template" bleeding time in rats: a vitamin K-dependent effect. Administration of warfarin to rats induced not only the well-known anticoagulant effect, but also an impairment of primary hemostasis as reflected by a significant prolongation of the "template" bleeding time. This effect was very closel...

Richter, B.W.M.; Onuska, J.M.; Niewiesk, S.; Prince, G.A.; Eichelberger, M.C., 2005: Antigen-dependent proliferation and cytokine induction in respiratory syncytial virus-infected cotton rats reflect the presence of effector-memory T cells. Respiratory syncytial virus (RSV) is a major cause of lower airway disease in infants and children. Immunity to RSV is not long lasting, resulting in re-occurring infections throughout life. Effective long-lived immunity results when central-memor...

Oltrogge, J.B.; Donnerstag, B.; Blaum, R.P.; Noujaim, A.A.; Traeger, L., 1996: Generation of human monoclonal anti-idiotypic antibodies with specificity to the murine monoclonal anti-CA 125 antibody B43.14. Two human monoclonal antibodies, HID-7E7 and ROB-6F2, were produced by EBV transformation of peripheral blood lymphocytes (PBL). PBL were obtained from a patient with ovarian cancer who had been exposed several times to a Tc-99m labeled murine mon...

Joshi, P.; Quach, O.L.; Giguere, S.S.B.; Cristea, I.M., 2013: A Functional Proteomics Perspective of DBC1 as a Regulator of Transcription. The past few years have seen significant advances in the use of modern proteomics approaches for biological discoveries. Among the fields impacted by proteomics is that of epigenetics, as mass spectrometry-based approaches have allowed the identif...

Elbadry, E.A.; Abo Elghar, M.R.; Hassan, S.M.; Kilany, S.M., 1969: Agistemus exsertus as a predator of two Tetranychid mites. The following is virtually the authors' abstract. Eggs of Tetranychus cinnabarinus (Boisd.) and Eutetranychus orientalis (Klein) were found in the laboratory in Egypt to be preferred above postembryonic stages as food by Agistemus exsertus Go...

Sternweiler, M.R., 1970: The use of physiotherapeutic modalities in the detection and treatment of the sequellae to organ transplantation. Progress in Physical Therapy 1(2): 95-105

Laborit, H., 1952: Obstetrical anesthesiology. Maroc Medical 31(330): 934-940

Szweda, P.A.; Friguet, B.; Szweda, L.I., 2002: Proteolysis, free radicals, and aging. Aging is accompanied by declines in cellular proteolytic capacity. Proteolytic processing is an important step in numerous cellular processes required for normal metabolic function. These include regulation of protein turnover, degradation of alte...