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A program to test linkage disequilibrium between loci in autotetraploid species


, : A program to test linkage disequilibrium between loci in autotetraploid species. Molecular Ecology Resources 9(3): 746-748

No software currently implements a test of linkage disequilibrium in autotetraploid species. We propose a program, LD4X that performs a Fisher's exact test between pairs of alleles at two loci. All combinations of alleles from two loci are treated in turn. If two alleles of a pair of loci have a nonrandom distribution, the markers are considered as linked. The program was tested on a set of microsatellite markers in synthetic alfalfa populations.

US$19.90

PMID: 21564734

DOI: 10.1111/j.1755-0998.2009.02530.x


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