geoscience.net logo
+ Resolve Article
+ Follow Us
Follow on FacebookFollow on Facebook
Follow on TwitterFollow on Twitter

+ Translate
+ Subscribe to Site Feed
GeoScience Most Shared ContentMost Shared Content

Computational identification of anthocyanin-specific transcription factors using a rice microarray and maximum boundary range algorithm


, : Computational identification of anthocyanin-specific transcription factors using a rice microarray and maximum boundary range algorithm. Evolutionary Bioinformatics Online 6: 133-141

This study identifies 2,617 candidate genes related to anthocyanin biosynthesis in rice using microarray analysis and a newly developed maximum boundary range algorithm. Three seed developmental stages were examined in white cultivar and two black Dissociation insertion mutants. The resultant 235 transcription factor genes found to be associated with anthocyanin were classified into nine groups. It is compared the 235 genes by transcription factor analysis and 593 genes from among clusters of COGs related to anthocyanin functions. Total 32 genes were found to be expressed commonly. Among these, 9 unknown and hypothetical genes were revealed to be expressed at each developmental stage and were verified by RT-PCR. These genes most likely play regulatory roles in either anthocyanin production or metabolism during flavonoid biosynthesis. While these genes require further validation, our results underline the potential usefulness of the newly developed algorithm.

US$19.90

PMID: 21079756

DOI: 10.4137/EBO.S6077


Other references

Psarev, Alexander M., 2001: Note about a diurnal rhythmicity of coprophilous flies and their parasitoids on mountain pastures. Leading factors determining diurnal activity of coprophilic flies on mountain pastures of Altai and Kazakhstan, are temperature of air and biotopical conditions of a pasture. In May - June for mass species of flies the activity has one peak. In Ju...

Lissi, E.A.; Salim-Hanna, M.; Fauré, M.; Videla, L.A., 1991: 2,2'-Azo-bis-amidinopropane as a radical source for lipid peroxidation and enzyme inactivation studies. 1. 2,2'-Azo-bis-amidinopropane (ABAP) thermal decomposition produces free radicals that initiate the lipid peroxidation of erythrocyte ghost membranes. 2. Addition of 6-n-propyl-2-thiouracil decreases the rate of the process, both by decreasi...

Veron, P.; Allo, Vérie.; Rivière, C.; Bernard, J.; Douar, A-Marie.; Masurier, C., 2007: Major subsets of human dendritic cells are efficiently transduced by self-complementary adeno-associated virus vectors 1 and 2. Dendritic cells (DC) are antigen-presenting cells pivotal for inducing immunity or tolerance. Gene transfer into DC is an important strategy for developing immunotherapeutic approaches against infectious pathogens and cancers. One of the vectors p...

Bowen, J.M.; Allen, P.T.; East, J.L.; Maruyama, K.; Newton, W.A.; Georgiades, J.; Priori, E.S.; Dmochowski, L., 1973: Molecular probes in studies of the relationship of viruses to human neoplasia. American Journal of Clinical Pathology 60(1): 88-99

Luo LianCong; Qin BoQiang; Zhu GuangWei, 2004: Sediment distribution pattern mapped from the combination of objective analysis and geostatistics in the large shallow Taihu Lake, China. An investigation was made into sediment depth at 723 irregularly scattered measurement points which cover all the regions in Taihu Lake, China. The combination of successive correction schemes and geostatistical method was used to get all the valu...

Kalaycioglu, M.; Bolwell, B., 1993: Eosinophilia after busulfan and cyclophosphamide followed by allogeneic bone marrow transplantation. Blood 82(10 SUPPL 1): 632A

Snyder, D.; Cernicchiaro, N.; Allan, S.A.; Cohnstaedt, L.W., 2016: Insecticidal sugar baits for adult biting midges. The mixing of an insecticide with sugar solution creates an oral toxin or insecticidal sugar bait (ISB) useful for reducing adult insect populations. The ability of ISBs to kill the biting midge Culicoides sonorensis Wirth and Jones (Diptera: Cera...

Kern F.; Pedersen J.K., 1973: Leishmaniasis in the usa a report of 10 cases in military personnel. Journal of the American Medical Association 226(8): 872-874

Malewski, T.; Malewska, A.; Rutkowski, R., 2003: RT-PCR technique and its applications. State-of the-art. The reverse transcription polymerase chain reaction (RT-PCR) is one of the most sensitive methods for the detection and quantitation of messenger RNA. It is widely used for quantification of mRNA levels and is useful tool for basic research, agric...

Samanc H.; Stamatovic S.; Radakovic N.; Bozic T.; Damnjanovic Z.; Mandic L., 1987: The incidence of the rennet dislocation and its genetic susceptibility evaluated on the basis of alpha amylase polymorphism in the herd of holstein breed cows. The determination of AmL genotypes in the blood serum could not prove a genetic susceptibility to the dislocation of the rennet. To determine the incidence of bovine rennet dislocation, a detailed clinical examination, inclusive of surgical method...